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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJC47041.1TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (1033 aa)    
Predicted Functional Partners:
AJC44478.1
Oar protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.751
AJC45345.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.749
AJC47564.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.715
AJC47635.1
Polysaccharide deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.705
AJC46888.1
Tryptophan halogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.682
AJC47647.1
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.678
AJC44781.1
Replication protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.669
AJC46398.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.657
AJC46163.1
Esterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.655
AJC44776.1
Zonular occludens toxin family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.653
Your Current Organism:
Xanthomonas sacchari
NCBI taxonomy Id: 56458
Other names: CFBP 4641, ICMP 16916, LMG 471, LMG:471, X. sacchari
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