AJC47146.1 protein (Xanthomonas sacchari) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AJC47146.1

Arabinogalactan endo-1,4-beta-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (332 aa)

Predicted Functional Partners:

AJC46157.1

0.754

AJC45276.1

0.701

AJC45502.1

0.697

AJC46895.1

0.687

AJC47729.1

0.654

AJC45976.1

0.646

AJC45275.1

0.611

AJC46601.1

0.598

AJC46602.1

0.594

AJC47440.1

0.571

Your Current Organism:

Xanthomonas sacchari

NCBI taxonomy Id: 56458
Other names: CFBP 4641, ICMP 16916, LMG 471, LMG:471, X. sacchari

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJC45275.1	AJC45276.1	SB85_05405	SB85_05415	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl hydrolase family 43; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family.	0.841
AJC45275.1	AJC45502.1	SB85_05405	SB85_06725	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	alpha-N-arabinofuranosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.808
AJC45275.1	AJC45976.1	SB85_05405	SB85_09540	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pectate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.546
AJC45275.1	AJC46157.1	SB85_05405	SB85_10620	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Xylanase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 30 family.	0.637
AJC45275.1	AJC46895.1	SB85_05405	SB85_15285	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Xylan 1,4-beta-xylosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family.	0.758
AJC45275.1	AJC47146.1	SB85_05405	SB85_16765	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Arabinogalactan endo-1,4-beta-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.611
AJC45275.1	AJC47440.1	SB85_05405	SB85_01030	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alpha-xylosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 31 family.	0.669
AJC45276.1	AJC45275.1	SB85_05415	SB85_05405	Glycosyl hydrolase family 43; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.841
AJC45276.1	AJC45502.1	SB85_05415	SB85_06725	Glycosyl hydrolase family 43; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family.	alpha-N-arabinofuranosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.772
AJC45276.1	AJC45976.1	SB85_05415	SB85_09540	Glycosyl hydrolase family 43; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family.	Pectate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.736
AJC45276.1	AJC46157.1	SB85_05415	SB85_10620	Glycosyl hydrolase family 43; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family.	Xylanase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 30 family.	0.749
AJC45276.1	AJC46601.1	SB85_05415	SB85_13420	Glycosyl hydrolase family 43; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family.	Cellulase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 5 (cellulase A) family.	0.442
AJC45276.1	AJC46602.1	SB85_05415	SB85_13425	Glycosyl hydrolase family 43; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family.	Cellulase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 5 (cellulase A) family.	0.462
AJC45276.1	AJC47146.1	SB85_05415	SB85_16765	Glycosyl hydrolase family 43; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family.	Arabinogalactan endo-1,4-beta-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.701
AJC45276.1	AJC47440.1	SB85_05415	SB85_01030	Glycosyl hydrolase family 43; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family.	Alpha-xylosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 31 family.	0.554
AJC45276.1	AJC47729.1	SB85_05415	SB85_17045	Glycosyl hydrolase family 43; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family.	Derived by automated computational analysis using gene prediction method: Protein Homology.	0.518
AJC45502.1	AJC45275.1	SB85_06725	SB85_05405	alpha-N-arabinofuranosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.808
AJC45502.1	AJC45276.1	SB85_06725	SB85_05415	alpha-N-arabinofuranosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl hydrolase family 43; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family.	0.772
AJC45502.1	AJC46157.1	SB85_06725	SB85_10620	alpha-N-arabinofuranosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Xylanase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 30 family.	0.596
AJC45502.1	AJC46895.1	SB85_06725	SB85_15285	alpha-N-arabinofuranosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Xylan 1,4-beta-xylosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family.	0.791