AJC47164.1 protein (Xanthomonas sacchari) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Gene Fusion

Cooccurrence

Coexpression

Experiments

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Textmining

[Homology]

Score

AJC47164.1

Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (131 aa)

Predicted Functional Partners:

AJC47725.1

0.862

AJC47163.1

0.641

AJC45954.1

0.610

AJC44905.1

0.544

AJC46343.1

0.544

AJC47269.1

0.523

AJC45380.1

0.510

AJC47165.1

0.472

AJC44901.1

0.464

AJC46086.1

0.464

Your Current Organism:

Xanthomonas sacchari

NCBI taxonomy Id: 56458
Other names: CFBP 4641, ICMP 16916, LMG 471, LMG:471, X. sacchari

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJC44901.1	AJC44905.1	SB85_03105	SB85_03130	Signal peptide protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.802
AJC44901.1	AJC45380.1	SB85_03105	SB85_06050	Signal peptide protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.696
AJC44901.1	AJC45954.1	SB85_03105	SB85_09415	Signal peptide protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	General secretion pathway protein GspM; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.751
AJC44901.1	AJC46343.1	SB85_03105	SB85_11810	Signal peptide protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ankyrin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.799
AJC44901.1	AJC47164.1	SB85_03105	SB85_16865	Signal peptide protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.464
AJC44901.1	AJC47269.1	SB85_03105	SB85_17445	Signal peptide protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.558
AJC44905.1	AJC44901.1	SB85_03130	SB85_03105	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Signal peptide protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.802
AJC44905.1	AJC45380.1	SB85_03130	SB85_06050	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.733
AJC44905.1	AJC45954.1	SB85_03130	SB85_09415	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	General secretion pathway protein GspM; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.477
AJC44905.1	AJC46343.1	SB85_03130	SB85_11810	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ankyrin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.735
AJC44905.1	AJC47164.1	SB85_03130	SB85_16865	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.544
AJC44905.1	AJC47269.1	SB85_03130	SB85_17445	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.542
AJC45380.1	AJC44901.1	SB85_06050	SB85_03105	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Signal peptide protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.696
AJC45380.1	AJC44905.1	SB85_06050	SB85_03130	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.733
AJC45380.1	AJC45954.1	SB85_06050	SB85_09415	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	General secretion pathway protein GspM; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.594
AJC45380.1	AJC46343.1	SB85_06050	SB85_11810	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ankyrin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.632
AJC45380.1	AJC47164.1	SB85_06050	SB85_16865	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.510
AJC45380.1	AJC47269.1	SB85_06050	SB85_17445	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.576
AJC45954.1	AJC44901.1	SB85_09415	SB85_03105	General secretion pathway protein GspM; Derived by automated computational analysis using gene prediction method: Protein Homology.	Signal peptide protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.751
AJC45954.1	AJC44905.1	SB85_09415	SB85_03130	General secretion pathway protein GspM; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.477