Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AJC47181.1Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (276 aa)    
Predicted Functional Partners:
AJC47180.1
Beta-lactamase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.782
AJC44781.1
Replication protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.704
AJC45460.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.593
AJC45370.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.569
AJC45111.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.566
AJC44772.1
Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.561
AJC44951.1
Acetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.556
AJC45345.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.481
AJC46794.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.463
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.446
Your Current Organism:
Xanthomonas sacchari
NCBI taxonomy Id: 56458
Other names: CFBP 4641, ICMP 16916, LMG 471, LMG:471, X. sacchari
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