STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJC47191.1Permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (303 aa)    
Predicted Functional Partners:
AJC47190.1
Phenazine biosynthesis protein PhzF; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.777
AJC44888.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.636
AJC44836.1
Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.489
AJC47580.1
Rieske (2Fe-2S) protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.476
AJC47425.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.461
AJC47686.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.428
AJC44889.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.427
AJC47728.1
Aspartate aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.415
AJC46904.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.411
AJC45872.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.409
Your Current Organism:
Xanthomonas sacchari
NCBI taxonomy Id: 56458
Other names: CFBP 4641, ICMP 16916, LMG 471, LMG:471, X. sacchari
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