Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-expression
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[Homology]
Score
AJC47302.1TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (1037 aa)    
Predicted Functional Partners:
AJC47736.1
Heme oxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.885
AJC47301.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.861
AJC46669.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.800
AJC47298.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.774
AJC47303.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.744
AJC46670.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.
 
  
 0.732
AJC46530.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.637
AJC46127.1
IclR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.620
AJC45218.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.615
AJC47737.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.613
Your Current Organism:
Xanthomonas sacchari
NCBI taxonomy Id: 56458
Other names: CFBP 4641, ICMP 16916, LMG 471, LMG:471, X. sacchari
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