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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJC47318.1ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology. (339 aa)    
Predicted Functional Partners:
AJC47319.1
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.924
AJC47739.1
Von Willebrand factor A; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.893
AJC47321.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.849
AJC47320.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.735
AJC46788.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.523
AJC47317.1
Fimbrial protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.499
AJC47315.1
Fimbrial protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.468
AJC47316.1
Fimbrial protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.468
AJC47313.1
Pilus assembly protein PilM; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.466
AJC47314.1
Fimbrial protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.466
Your Current Organism:
Xanthomonas sacchari
NCBI taxonomy Id: 56458
Other names: CFBP 4641, ICMP 16916, LMG 471, LMG:471, X. sacchari
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