AJC47360.1 protein (Xanthomonas sacchari) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

Assay-based Predictions

experimentally determined

co-expression

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gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

AJC47360.1

Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (688 aa)

Predicted Functional Partners:

AJC47359.1

0.861

AJC44481.1

0.747

AJC46306.1

0.738

AJC46341.1

0.722

AJC46821.1

0.707

AJC45610.1

0.703

AJC47622.1

0.692

AJC45823.1

0.682

phoB

0.677

AJC44800.1

0.619

Your Current Organism:

Xanthomonas sacchari

NCBI taxonomy Id: 56458
Other names: CFBP 4641, ICMP 16916, LMG 471, LMG:471, X. sacchari

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJC44481.1	AJC45610.1	SB85_00490	SB85_07305	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.906
AJC44481.1	AJC46306.1	SB85_00490	SB85_11575	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	Two-component response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.740
AJC44481.1	AJC46341.1	SB85_00490	SB85_11790	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	Two-component response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.736
AJC44481.1	AJC46821.1	SB85_00490	SB85_14805	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.729
AJC44481.1	AJC47359.1	SB85_00490	SB85_17960	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.507
AJC44481.1	AJC47360.1	SB85_00490	SB85_17965	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.747
AJC44481.1	AJC47622.1	SB85_00490	SB85_11795	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.784
AJC44800.1	AJC46341.1	SB85_02490	SB85_11790	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	Two-component response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.768
AJC44800.1	AJC47359.1	SB85_02490	SB85_17960	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.733
AJC44800.1	AJC47360.1	SB85_02490	SB85_17965	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.619
AJC44800.1	AJC47622.1	SB85_02490	SB85_11795	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.706
AJC45610.1	AJC44481.1	SB85_07305	SB85_00490	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.906
AJC45610.1	AJC46306.1	SB85_07305	SB85_11575	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	Two-component response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.713
AJC45610.1	AJC46341.1	SB85_07305	SB85_11790	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	Two-component response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.700
AJC45610.1	AJC47359.1	SB85_07305	SB85_17960	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.472
AJC45610.1	AJC47360.1	SB85_07305	SB85_17965	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.703
AJC45610.1	AJC47622.1	SB85_07305	SB85_11795	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.771
AJC45823.1	AJC46306.1	SB85_08595	SB85_11575	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Two-component response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.775
AJC45823.1	AJC46341.1	SB85_08595	SB85_11790	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Two-component response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.780
AJC45823.1	AJC46821.1	SB85_08595	SB85_14805	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.778