AJC47744.1 protein (Xanthomonas sacchari) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

AJC47744.1

Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (185 aa)

Predicted Functional Partners:

AJC47383.1

0.571

AJC47384.1

0.516

AJC46361.1

0.492

AJC45581.1

0.431

rnc

0.413

Your Current Organism:

Xanthomonas sacchari

NCBI taxonomy Id: 56458
Other names: CFBP 4641, ICMP 16916, LMG 471, LMG:471, X. sacchari

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJC45581.1	AJC46361.1	SB85_07145	SB85_11920	Phosphinothricin acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.504
AJC45581.1	AJC47744.1	SB85_07145	SB85_18100	Phosphinothricin acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.431
AJC45581.1	rnc	SB85_07145	SB85_06550	Phosphinothricin acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ribonuclease 3; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	0.482
AJC46361.1	AJC45581.1	SB85_11920	SB85_07145	Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphinothricin acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.504
AJC46361.1	AJC47744.1	SB85_11920	SB85_18100	Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.492
AJC46361.1	rnc	SB85_11920	SB85_06550	Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ribonuclease 3; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	0.413
AJC47383.1	AJC47384.1	SB85_18090	SB85_18095	Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polysaccharide deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.834
AJC47383.1	AJC47744.1	SB85_18090	SB85_18100	Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method: Protein Homology.	Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.571
AJC47384.1	AJC47383.1	SB85_18095	SB85_18090	Polysaccharide deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.834
AJC47384.1	AJC47744.1	SB85_18095	SB85_18100	Polysaccharide deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.516
AJC47744.1	AJC45581.1	SB85_18100	SB85_07145	Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphinothricin acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.431
AJC47744.1	AJC46361.1	SB85_18100	SB85_11920	Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.492
AJC47744.1	AJC47383.1	SB85_18100	SB85_18090	Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.571
AJC47744.1	AJC47384.1	SB85_18100	SB85_18095	Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polysaccharide deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.516
AJC47744.1	rnc	SB85_18100	SB85_06550	Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ribonuclease 3; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	0.413
rnc	AJC45581.1	SB85_06550	SB85_07145	Ribonuclease 3; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	Phosphinothricin acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.482
rnc	AJC46361.1	SB85_06550	SB85_11920	Ribonuclease 3; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.413
rnc	AJC47744.1	SB85_06550	SB85_18100	Ribonuclease 3; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.413