STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KGR61683.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (529 aa)    
Predicted Functional Partners:
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.806
glyS
glycyl-tRNA synthetase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.785
KGR59652.1
Transcription accessory protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.754
htpG
Heat shock protein 90; Molecular chaperone. Has ATPase activity.
   
 0.749
KGR60153.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.749
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 0.744
KGR61046.1
Heat shock protein Hsp70; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.725
dnaK
Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 0.725
KGR62074.1
Peptide-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.721
KGR58804.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.721
Your Current Organism:
Xanthomonas vasicola
NCBI taxonomy Id: 56459
Other names: CFBP 2543, ICMP 3103, LMG 736, LMG:736, NCPPB 2417, X. vasicola, Xanthomonas campestris pv. holcicola, Xanthomonas holcicola, Xanthomonas vasicola pv. holcicola
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