Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
APO94557.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (152 aa)    
Predicted Functional Partners:
murD
UDP-N-acetylmuramoylalanine--D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family.
       0.779
APO94556.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.779
APO94558.1
Diaminopimelate decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
       0.779
APO94559.1
Phenazine biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.507
APO94554.1
Dienelactone hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.463
APO94560.1
Phenazine biosynthesis protein PhzF family; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.445
Your Current Organism:
Xanthomonas vesicatoria
NCBI taxonomy Id: 56460
Other names: ATCC 35937, CFBP 2537, ICMP 63, LMG 911, LMG:911, NCPPB 422, X. vesicatoria, Xanthomonas campestris pv. Vesicatoria type B
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