Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
pqqEPyrroloquinoline quinone biosynthesis protein PqqE; Catalyzes the cross-linking of a glutamate residue and a tyrosine residue in the PqqA protein as part of the biosynthesis of pyrroloquinoline quinone (PQQ). (376 aa)    
Predicted Functional Partners:
pqqB
Pyrroloquinoline quinone biosynthesis protein PqqB; May be involved in the transport of PQQ or its precursor to the periplasm; Belongs to the PqqB family.
 
  
 0.986
pqqC
Pyrroloquinoline quinone biosynthesis protein PqqC; Ring cyclization and eight-electron oxidation of 3a-(2-amino- 2-carboxyethyl)-4,5-dioxo-4,5,6,7,8,9-hexahydroquinoline-7,9- dicarboxylic-acid to PQQ.
 
  
 0.986
pqqD
Pyrroloquinoline quinone biosynthesis protein PqqD; Functions as a PqqA binding protein and presents PqqA to PqqE, in the pyrroloquinoline quinone (PQQ) biosynthetic pathway.
 
  
 0.968
APO97484.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.854
APO97483.1
Methanol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.808
APO94728.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.584
APO95679.1
Polyvinylalcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.579
APO94723.1
Coenzyme PQQ precursor peptide PqqA; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.553
APO93537.1
Pyrroloquinoline quinone-dependent dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.457
APO94812.1
Glucose dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.423
Your Current Organism:
Xanthomonas vesicatoria
NCBI taxonomy Id: 56460
Other names: ATCC 35937, CFBP 2537, ICMP 63, LMG 911, LMG:911, NCPPB 422, X. vesicatoria, Xanthomonas campestris pv. Vesicatoria type B
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