STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APO97448.1Phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (413 aa)    
Predicted Functional Partners:
APO97181.1
Bifunctional diguanylate cyclase/phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.736
APO96175.1
GGDEF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.733
APO93935.1
Diguanylate phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.729
APO97409.1
Sensor domain-containing diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.722
APO93699.1
Sensor domain-containing phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.713
BI313_22535
Cell shape determination protein CcmA; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.686
APO93891.1
c-di-GMP phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.677
APO93435.1
GGDEF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.639
APO96383.1
GGDEF domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.631
APO94149.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.629
Your Current Organism:
Xanthomonas vesicatoria
NCBI taxonomy Id: 56460
Other names: ATCC 35937, CFBP 2537, ICMP 63, LMG 911, LMG:911, NCPPB 422, X. vesicatoria, Xanthomonas campestris pv. Vesicatoria type B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.