STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C1MI56_MICPCGlycoside hydrolase family 13 protein. (695 aa)    
Predicted Functional Partners:
C1N1Q4_MICPC
Phospho-2-dehydro-3-deoxyheptonate aldolase.
   
 0.669
DPE1
4-alpha-glucanotransferase.
 
 
 0.606
SSIIIA
Glycosyltransferase family 5 protein.
  
 
 0.492
SSIIIC
Soluble starch synthase.
  
 
 0.492
SSIIIB
Soluble starch synthase.
  
 
 0.492
C1ML78_MICPC
Predicted protein; Belongs to the aspartate/ornithine carbamoyltransferase superfamily.
  
 
 0.470
DPE2
Glycoside hydrolase family 77 protein.
  
 
 0.443
C1MJ32_MICPC
Predicted protein; Belongs to the pirin family.
   
 0.439
C1MTQ5_MICPC
Predicted protein; Belongs to the pirin family.
   
 0.439
C1MTI0_MICPC
Predicted protein.
   
 0.433
Your Current Organism:
Micromonas pusilla
NCBI taxonomy Id: 564608
Other names: M. pusilla CCMP1545, Micromonas pusilla CCMP1545
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.