STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDC48Cell division cycle protein 48; Belongs to the AAA ATPase family. (823 aa)    
Predicted Functional Partners:
C1MXP3_MICPC
Predicted protein.
   
 0.989
C1MNP9_MICPC
Predicted protein.
   
 0.977
C1N586_MICPC
Predicted protein.
    
 0.946
C1MYP1_MICPC
Predicted protein.
     
  0.900
C1MPE0_MICPC
Predicted protein.
   
 0.870
C1MHZ0_MICPC
Predicted protein.
    
 0.864
C1MYH0_MICPC
Predicted protein.
   
 0.839
C1MP54_MICPC
Ataxin-3.
   
 0.836
C1MYC1_MICPC
Predicted protein.
   
 
 0.807
C1N6C3_MICPC
Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family.
   
 0.807
Your Current Organism:
Micromonas pusilla
NCBI taxonomy Id: 564608
Other names: M. pusilla CCMP1545, Micromonas pusilla CCMP1545
Server load: low (22%) [ZH]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.