TK protein (Micromonas pusilla) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

TK

Thymidine kinase; Belongs to the thymidine kinase family. (472 aa)

Predicted Functional Partners:

DHFR-TS

0.997

C1MRB8_MICPC

0.981

C1MQT8_MICPC

0.977

C1N8H6_MICPC

0.971

C1N7S6_MICPC

0.965

C1MKH5_MICPC

0.910

C1MWG8_MICPC

0.904

C1MYI8_MICPC

0.900

C1N1L2_MICPC

0.900

C1MLH6_MICPC

0.692

Your Current Organism:

Micromonas pusilla

NCBI taxonomy Id: 564608
Other names: M. pusilla CCMP1545, Micromonas pusilla CCMP1545

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C1MKH5_MICPC	C1MLH6_MICPC	C1MKH5	C1MLH6	Thymidine kinase.	Phosphomannomutase; Involved in the synthesis of the GDP-mannose and dolichol- phosphate-mannose required for a number of critical mannosyl transfer reactions.	0.692
C1MKH5_MICPC	C1MQT8_MICPC	C1MKH5	C1MQT8	Thymidine kinase.	Predicted protein.	0.977
C1MKH5_MICPC	C1MRB8_MICPC	C1MKH5	C1MRB8	Thymidine kinase.	Predicted protein.	0.981
C1MKH5_MICPC	C1MWG8_MICPC	C1MKH5	C1MWG8	Thymidine kinase.	Predicted protein.	0.904
C1MKH5_MICPC	C1MYI8_MICPC	C1MKH5	C1MYI8	Thymidine kinase.	Predicted protein.	0.900
C1MKH5_MICPC	C1N1L2_MICPC	C1MKH5	C1N1L2	Thymidine kinase.	Predicted protein.	0.900
C1MKH5_MICPC	C1N7S6_MICPC	C1MKH5	C1N7S6	Thymidine kinase.	Cytidine and deoxycytidylate deaminase zinc-binding protein.	0.976
C1MKH5_MICPC	C1N8H6_MICPC	C1MKH5	C1N8H6	Thymidine kinase.	Predicted protein.	0.971
C1MKH5_MICPC	DHFR-TS	C1MKH5	C1MMA6	Thymidine kinase.	Bifunctional dihydrofolate reductase-thymidylate synthase; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism; In the C-terminal section; belongs to the thymidylate synthase family.	0.997
C1MKH5_MICPC	TK	C1MKH5	C1MP55	Thymidine kinase.	Thymidine kinase; Belongs to the thymidine kinase family.	0.910
C1MLH6_MICPC	C1MKH5_MICPC	C1MLH6	C1MKH5	Phosphomannomutase; Involved in the synthesis of the GDP-mannose and dolichol- phosphate-mannose required for a number of critical mannosyl transfer reactions.	Thymidine kinase.	0.692
C1MLH6_MICPC	DHFR-TS	C1MLH6	C1MMA6	Phosphomannomutase; Involved in the synthesis of the GDP-mannose and dolichol- phosphate-mannose required for a number of critical mannosyl transfer reactions.	Bifunctional dihydrofolate reductase-thymidylate synthase; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism; In the C-terminal section; belongs to the thymidylate synthase family.	0.758
C1MLH6_MICPC	TK	C1MLH6	C1MP55	Phosphomannomutase; Involved in the synthesis of the GDP-mannose and dolichol- phosphate-mannose required for a number of critical mannosyl transfer reactions.	Thymidine kinase; Belongs to the thymidine kinase family.	0.692
C1MQT8_MICPC	C1MKH5_MICPC	C1MQT8	C1MKH5	Predicted protein.	Thymidine kinase.	0.977
C1MQT8_MICPC	C1MRB8_MICPC	C1MQT8	C1MRB8	Predicted protein.	Predicted protein.	0.865
C1MQT8_MICPC	C1MWG8_MICPC	C1MQT8	C1MWG8	Predicted protein.	Predicted protein.	0.911
C1MQT8_MICPC	C1MYI8_MICPC	C1MQT8	C1MYI8	Predicted protein.	Predicted protein.	0.928
C1MQT8_MICPC	C1N1L2_MICPC	C1MQT8	C1N1L2	Predicted protein.	Predicted protein.	0.901
C1MQT8_MICPC	C1N7S6_MICPC	C1MQT8	C1N7S6	Predicted protein.	Cytidine and deoxycytidylate deaminase zinc-binding protein.	0.493
C1MQT8_MICPC	C1N8H6_MICPC	C1MQT8	C1N8H6	Predicted protein.	Predicted protein.	0.553