C1MPK3_MICPC protein (Micromonas pusilla) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

C1MPK3_MICPC

Predicted protein. (207 aa)

Predicted Functional Partners:

C1MWW1_MICPC

0.975

C1MH03_MICPC

0.974

C1MRV4_MICPC

0.974

C1MXW1_MICPC

0.974

C1MJ33_MICPC

0.973

C1MPK4_MICPC

0.973

C1N7G8_MICPC

0.972

C1ML12_MICPC

0.971

C1MQ23_MICPC

0.971

C1MT75_MICPC

0.970

Your Current Organism:

Micromonas pusilla

NCBI taxonomy Id: 564608
Other names: M. pusilla CCMP1545, Micromonas pusilla CCMP1545

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C1MH03_MICPC	C1MJ33_MICPC	C1MH03	C1MJ33	Predicted protein; Belongs to the universal ribosomal protein uS19 family.	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	0.999
C1MH03_MICPC	C1ML12_MICPC	C1MH03	C1ML12	Predicted protein; Belongs to the universal ribosomal protein uS19 family.	Predicted protein.	0.999
C1MH03_MICPC	C1MPK3_MICPC	C1MH03	C1MPK3	Predicted protein; Belongs to the universal ribosomal protein uS19 family.	Predicted protein.	0.974
C1MH03_MICPC	C1MPK4_MICPC	C1MH03	C1MPK4	Predicted protein; Belongs to the universal ribosomal protein uS19 family.	Predicted protein.	0.999
C1MH03_MICPC	C1MQ23_MICPC	C1MH03	C1MQ23	Predicted protein; Belongs to the universal ribosomal protein uS19 family.	Predicted protein; Belongs to the universal ribosomal protein uS3 family.	0.999
C1MH03_MICPC	C1MRV4_MICPC	C1MH03	C1MRV4	Predicted protein; Belongs to the universal ribosomal protein uS19 family.	Predicted protein; Belongs to the universal ribosomal protein uL23 family.	0.999
C1MH03_MICPC	C1MT75_MICPC	C1MH03	C1MT75	Predicted protein; Belongs to the universal ribosomal protein uS19 family.	Predicted protein.	0.999
C1MH03_MICPC	C1MWW1_MICPC	C1MH03	C1MWW1	Predicted protein; Belongs to the universal ribosomal protein uS19 family.	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.999
C1MH03_MICPC	C1MXW1_MICPC	C1MH03	C1MXW1	Predicted protein; Belongs to the universal ribosomal protein uS19 family.	Predicted protein.	0.999
C1MH03_MICPC	C1N7G8_MICPC	C1MH03	C1N7G8	Predicted protein; Belongs to the universal ribosomal protein uS19 family.	Predicted protein.	0.999
C1MJ33_MICPC	C1MH03_MICPC	C1MJ33	C1MH03	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	Predicted protein; Belongs to the universal ribosomal protein uS19 family.	0.999
C1MJ33_MICPC	C1ML12_MICPC	C1MJ33	C1ML12	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	Predicted protein.	0.999
C1MJ33_MICPC	C1MPK3_MICPC	C1MJ33	C1MPK3	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	Predicted protein.	0.973
C1MJ33_MICPC	C1MPK4_MICPC	C1MJ33	C1MPK4	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	Predicted protein.	0.999
C1MJ33_MICPC	C1MQ23_MICPC	C1MJ33	C1MQ23	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	Predicted protein; Belongs to the universal ribosomal protein uS3 family.	0.999
C1MJ33_MICPC	C1MRV4_MICPC	C1MJ33	C1MRV4	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	Predicted protein; Belongs to the universal ribosomal protein uL23 family.	0.999
C1MJ33_MICPC	C1MT75_MICPC	C1MJ33	C1MT75	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	Predicted protein.	0.999
C1MJ33_MICPC	C1MWW1_MICPC	C1MJ33	C1MWW1	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.999
C1MJ33_MICPC	C1MXW1_MICPC	C1MJ33	C1MXW1	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	Predicted protein.	0.999
C1MJ33_MICPC	C1N7G8_MICPC	C1MJ33	C1N7G8	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	Predicted protein.	0.996