STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1Y2EUM4RING-type domain-containing protein. (361 aa)    
Predicted Functional Partners:
A0A1Y2FH22
Polyubiquitin 10.
   
 0.963
A0A1Y2FDK8
Ubiquitin-conjugating enzyme/RWD-like protein.
   
 0.867
A0A1Y2FEQ9
Ubiquitin-conjugating enzyme/RWD-like protein; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.867
A0A1Y2FQS6
Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.
    
 0.837
A0A1Y2FLL6
Ribosomal protein S27a-domain-containing protein.
    
 0.836
A0A1Y2FQ54
Complex I intermediate-associated protein 30-domain-containing protein.
    
 0.836
A0A1Y2FQ99
NADH:ubiquinone oxidoreductase intermediate-associated protein 30.
    
 0.836
A0A1Y2FE91
Piwi domain-domain-containing protein; Belongs to the argonaute family.
    
 0.810
A0A1Y2FVH0
F-BAR domain-containing protein.
    
 0.781
A0A1Y2FCD6
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
    
 0.759
Your Current Organism:
Protomyces lactucaedebilis
NCBI taxonomy Id: 56484
Other names: NRRL YB-4353, P. lactucaedebilis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.