STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1Y2EVY3DNA-directed RNA polymerase I subunit rpa43. (162 aa)    
Predicted Functional Partners:
A0A1Y2F0N3
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.999
A0A1Y2F0U7
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.
   
 0.999
A0A1Y2F376
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.999
A0A1Y2F7Q7
DNA-directed RNA polymerase I.
   
 0.999
A0A1Y2F915
DNA-directed RNA polymerases I and III subunit RPAC1.
   
 0.999
A0A1Y2FSN4
RNA polymerase II.
   
 0.999
A0A1Y2FUR4
DNA directed RNA polymerase.
   
 0.999
A0A1Y2FVE4
DNA-directed RNA polymerase, subunit N/Rpb10.
   
 0.999
A0A1Y2FXS5
RNA polymerase, subunit omega/K/RPB6.
   
 0.999
A0A1Y2FYZ3
RNA polymerase I associated factor, A49-like protein.
   
 0.999
Your Current Organism:
Protomyces lactucaedebilis
NCBI taxonomy Id: 56484
Other names: NRRL YB-4353, P. lactucaedebilis
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