STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1Y2EWV9Putative exosome 3. (196 aa)    
Predicted Functional Partners:
A0A1Y2F9A4
RNase_PH domain-containing protein.
   
 0.999
A0A1Y2FCD1
Exosome complex exonuclease RRP4.
   
 0.999
A0A1Y2FEX9
3' exoribonuclease family, domain 1-domain-containing protein.
   
 0.999
A0A1Y2FLQ7
Exosome complex exonuclease RRP40.
   
 0.999
A0A1Y2FSM2
Exosome complex component rrp43.
   
 0.999
A0A1Y2FUJ3
Ribosomal protein S5 domain 2-type protein.
   
 0.999
A0A1Y2FVE1
S1 motif domain-containing protein; Belongs to the RNR ribonuclease family.
   
 0.999
A0A1Y2FWZ9
Ribosomal protein S5 domain 2-type protein.
   
 0.999
A0A1Y2ESQ4
Uncharacterized protein.
   
 0.992
A0A1Y2ETD7
rRNA-processing arch domain-domain-containing protein.
   
 0.982
Your Current Organism:
Protomyces lactucaedebilis
NCBI taxonomy Id: 56484
Other names: NRRL YB-4353, P. lactucaedebilis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.