A0A1Y2EY99 protein (Protomyces lactucaedebilis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A1Y2EY99

P-loop containing nucleoside triphosphate hydrolase protein. (350 aa)

Predicted Functional Partners:

A0A1Y2FEV2

0.991

A0A1Y2EV77

0.974

A0A1Y2FDI0

0.960

NOP7

0.960

A0A1Y2F3W6

0.955

ERB1

0.949

A0A1Y2FBZ3

0.949

A0A1Y2FUM0

0.948

A0A1Y2FC29

0.943

A0A1Y2FHD8

0.940

Your Current Organism:

Protomyces lactucaedebilis

NCBI taxonomy Id: 56484
Other names: NRRL YB-4353, P. lactucaedebilis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1Y2EV77	A0A1Y2EY99	A0A1Y2EV77	A0A1Y2EY99	CBF/Mak21 family-domain-containing protein.	P-loop containing nucleoside triphosphate hydrolase protein.	0.974
A0A1Y2EV77	A0A1Y2F3W6	A0A1Y2EV77	A0A1Y2F3W6	CBF/Mak21 family-domain-containing protein.	Brix domain-domain-containing protein.	0.947
A0A1Y2EV77	A0A1Y2FBZ3	A0A1Y2EV77	A0A1Y2FBZ3	CBF/Mak21 family-domain-containing protein.	Brix domain-domain-containing protein.	0.931
A0A1Y2EV77	A0A1Y2FC29	A0A1Y2EV77	A0A1Y2FC29	CBF/Mak21 family-domain-containing protein.	Eukaryotic rRNA processing.	0.933
A0A1Y2EV77	A0A1Y2FDI0	A0A1Y2EV77	A0A1Y2FDI0	CBF/Mak21 family-domain-containing protein.	Uncharacterized protein.	0.952
A0A1Y2EV77	A0A1Y2FEV2	A0A1Y2EV77	A0A1Y2FEV2	CBF/Mak21 family-domain-containing protein.	Brix domain-domain-containing protein.	0.960
A0A1Y2EV77	A0A1Y2FHD8	A0A1Y2EV77	A0A1Y2FHD8	CBF/Mak21 family-domain-containing protein.	P-loop containing nucleoside triphosphate hydrolase protein; Belongs to the DEAD box helicase family.	0.793
A0A1Y2EV77	A0A1Y2FUM0	A0A1Y2EV77	A0A1Y2FUM0	CBF/Mak21 family-domain-containing protein.	Uncharacterized protein.	0.899
A0A1Y2EV77	ERB1	A0A1Y2EV77	A0A1Y2F515	CBF/Mak21 family-domain-containing protein.	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.937
A0A1Y2EV77	NOP7	A0A1Y2EV77	A0A1Y2FWV5	CBF/Mak21 family-domain-containing protein.	Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.962
A0A1Y2EY99	A0A1Y2EV77	A0A1Y2EY99	A0A1Y2EV77	P-loop containing nucleoside triphosphate hydrolase protein.	CBF/Mak21 family-domain-containing protein.	0.974
A0A1Y2EY99	A0A1Y2F3W6	A0A1Y2EY99	A0A1Y2F3W6	P-loop containing nucleoside triphosphate hydrolase protein.	Brix domain-domain-containing protein.	0.955
A0A1Y2EY99	A0A1Y2FBZ3	A0A1Y2EY99	A0A1Y2FBZ3	P-loop containing nucleoside triphosphate hydrolase protein.	Brix domain-domain-containing protein.	0.949
A0A1Y2EY99	A0A1Y2FC29	A0A1Y2EY99	A0A1Y2FC29	P-loop containing nucleoside triphosphate hydrolase protein.	Eukaryotic rRNA processing.	0.943
A0A1Y2EY99	A0A1Y2FDI0	A0A1Y2EY99	A0A1Y2FDI0	P-loop containing nucleoside triphosphate hydrolase protein.	Uncharacterized protein.	0.960
A0A1Y2EY99	A0A1Y2FEV2	A0A1Y2EY99	A0A1Y2FEV2	P-loop containing nucleoside triphosphate hydrolase protein.	Brix domain-domain-containing protein.	0.991
A0A1Y2EY99	A0A1Y2FHD8	A0A1Y2EY99	A0A1Y2FHD8	P-loop containing nucleoside triphosphate hydrolase protein.	P-loop containing nucleoside triphosphate hydrolase protein; Belongs to the DEAD box helicase family.	0.940
A0A1Y2EY99	A0A1Y2FUM0	A0A1Y2EY99	A0A1Y2FUM0	P-loop containing nucleoside triphosphate hydrolase protein.	Uncharacterized protein.	0.948
A0A1Y2EY99	ERB1	A0A1Y2EY99	A0A1Y2F515	P-loop containing nucleoside triphosphate hydrolase protein.	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.949
A0A1Y2EY99	NOP7	A0A1Y2EY99	A0A1Y2FWV5	P-loop containing nucleoside triphosphate hydrolase protein.	Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.960