STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1Y2F486Glycosidase; Belongs to the glycosyl hydrolase 16 family. (372 aa)    
Predicted Functional Partners:
A0A1Y2F1I2
Transcription initiation factor IID, 18kD subunit-domain-containing protein.
    
 0.673
A0A1Y2FF64
Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.
    
 0.596
A0A1Y2F167
PRK domain-containing protein.
    
 0.581
A0A1Y2F3H8
Uracil phosphoribosyltransferase.
    
 0.581
A0A1Y2FDJ5
Uridine kinase; Belongs to the uridine kinase family.
    
 0.581
A0A1Y2FQK5
Uracil phosphoribosyltransferase.
    
 0.581
A0A1Y2EWD9
DHH family protein.
   
 0.576
A0A1Y2F2X5
Velvet factor.
   
 0.576
A0A1Y2F9Q2
CFEM domain-containing protein.
   
 0.576
A0A1Y2FQP0
Uncharacterized protein.
   
 0.576
Your Current Organism:
Protomyces lactucaedebilis
NCBI taxonomy Id: 56484
Other names: NRRL YB-4353, P. lactucaedebilis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.