STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1Y2F671DNA damage-binding protein CMR1; DNA-binding protein that binds to both single- and double- stranded DNA. Binds preferentially to UV-damaged DNA. May be involved in DNA-metabolic processes. (525 aa)    
Predicted Functional Partners:
A0A1Y2FNY2
CPSF A subunit region-domain-containing protein.
    
 0.980
A0A1Y2EUE5
Cullin family-domain-containing protein; Belongs to the cullin family.
    
 0.926
A0A1Y2FKL0
PH domain-containing protein.
 
  
   0.902
A0A1Y2FBY0
Uncharacterized protein.
    
 0.877
A0A1Y2F7E8
RING-type domain-containing protein.
    
 0.873
A0A1Y2FVQ3
DNA excision repair protein ckn1.
    
 0.846
A0A1Y2FK30
Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism.
    
 0.841
A0A1Y2FSY5
JAB1/Mov34/MPN/PAD-1 ubiquitin protease-domain-containing protein.
    
 0.832
A0A1Y2F7I8
Uncharacterized protein.
   
 0.826
A0A1Y2FF50
Uncharacterized protein.
   
 0.826
Your Current Organism:
Protomyces lactucaedebilis
NCBI taxonomy Id: 56484
Other names: NRRL YB-4353, P. lactucaedebilis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.