A0A1Y2FBY2 protein (Protomyces lactucaedebilis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A1Y2FBY2

Beta-lactamase-like protein. (136 aa)

Predicted Functional Partners:

A0A1Y2FMA4

0.697

A0A1Y2F9A4

0.531

A0A1Y2FEX9

0.531

A0A1Y2FUJ3

0.531

A0A1Y2F335

0.448

A0A1Y2F6L5

0.424

A0A1Y2FQ28

0.411

A0A1Y2EZL2

0.407

A0A1Y2FUE7

0.404

A0A1Y2F376

0.400

Your Current Organism:

Protomyces lactucaedebilis

NCBI taxonomy Id: 56484
Other names: NRRL YB-4353, P. lactucaedebilis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1Y2EZL2	A0A1Y2F335	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Beta-lactamase-like protein.	0.538
A0A1Y2EZL2	A0A1Y2F376	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.941
A0A1Y2EZL2	A0A1Y2F6L5	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Periodic tryptophan protein-like protein 2.	0.875
A0A1Y2EZL2	A0A1Y2FBY2	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Beta-lactamase-like protein.	0.407
A0A1Y2EZL2	A0A1Y2FUE7	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	WD40-repeat-containing domain protein.	0.621
A0A1Y2F335	A0A1Y2EZL2	Beta-lactamase-like protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.538
A0A1Y2F335	A0A1Y2F376	Beta-lactamase-like protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.526
A0A1Y2F335	A0A1Y2F6L5	Beta-lactamase-like protein.	Periodic tryptophan protein-like protein 2.	0.619
A0A1Y2F335	A0A1Y2F9A4	Beta-lactamase-like protein.	RNase_PH domain-containing protein.	0.531
A0A1Y2F335	A0A1Y2FBY2	Beta-lactamase-like protein.	Beta-lactamase-like protein.	0.448
A0A1Y2F335	A0A1Y2FEX9	Beta-lactamase-like protein.	3' exoribonuclease family, domain 1-domain-containing protein.	0.531
A0A1Y2F335	A0A1Y2FMA4	Beta-lactamase-like protein.	Endonuclease.	0.926
A0A1Y2F335	A0A1Y2FQ28	Beta-lactamase-like protein.	Beta-lactamase-like protein.	0.411
A0A1Y2F335	A0A1Y2FUE7	Beta-lactamase-like protein.	WD40-repeat-containing domain protein.	0.539
A0A1Y2F335	A0A1Y2FUJ3	Beta-lactamase-like protein.	Ribosomal protein S5 domain 2-type protein.	0.531
A0A1Y2F376	A0A1Y2EZL2	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.941
A0A1Y2F376	A0A1Y2F335	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Beta-lactamase-like protein.	0.526
A0A1Y2F376	A0A1Y2F6L5	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Periodic tryptophan protein-like protein 2.	0.907
A0A1Y2F376	A0A1Y2FBY2	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Beta-lactamase-like protein.	0.400
A0A1Y2F376	A0A1Y2FUE7	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	WD40-repeat-containing domain protein.	0.907