A0A1Y2FBZ9 protein (Protomyces lactucaedebilis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A1Y2FBZ9

Uncharacterized protein. (575 aa)

Predicted Functional Partners:

A0A1Y2EXP0

0.683

A0A1Y2F1G7

0.673

A0A1Y2F6S3

0.656

A0A1Y2FSQ8

0.656

A0A1Y2FU46

0.656

A0A1Y2FUL3

0.623

A0A1Y2FCD6

0.595

A0A1Y2FGM3

0.569

A0A1Y2FDW4

0.563

A0A1Y2F818

0.561

Your Current Organism:

Protomyces lactucaedebilis

NCBI taxonomy Id: 56484
Other names: NRRL YB-4353, P. lactucaedebilis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1Y2EXP0	A0A1Y2F1G7	Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome.	Spindle pole body component.	0.993
A0A1Y2EXP0	A0A1Y2F6S3	Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome.	DASH complex subunit Ask1-domain-containing protein.	0.917
A0A1Y2EXP0	A0A1Y2FBZ9	Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome.	Uncharacterized protein.	0.683
A0A1Y2EXP0	A0A1Y2FDW4	Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome.	Uncharacterized protein.	0.683
A0A1Y2EXP0	A0A1Y2FSQ8	Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome.	Spindle pole body component.	0.993
A0A1Y2EXP0	A0A1Y2FU46	Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome.	Spindle pole body component.	0.977
A0A1Y2EXP0	A0A1Y2FUL3	Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome.	Nucleoside diphosphate kinase.	0.728
A0A1Y2F1G7	A0A1Y2EXP0	Spindle pole body component.	Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome.	0.993
A0A1Y2F1G7	A0A1Y2F6S3	Spindle pole body component.	DASH complex subunit Ask1-domain-containing protein.	0.922
A0A1Y2F1G7	A0A1Y2FBZ9	Spindle pole body component.	Uncharacterized protein.	0.673
A0A1Y2F1G7	A0A1Y2FDW4	Spindle pole body component.	Uncharacterized protein.	0.673
A0A1Y2F1G7	A0A1Y2FSQ8	Spindle pole body component.	Spindle pole body component.	0.994
A0A1Y2F1G7	A0A1Y2FU46	Spindle pole body component.	Spindle pole body component.	0.982
A0A1Y2F1G7	A0A1Y2FUL3	Spindle pole body component.	Nucleoside diphosphate kinase.	0.718
A0A1Y2F6S3	A0A1Y2EXP0	DASH complex subunit Ask1-domain-containing protein.	Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome.	0.917
A0A1Y2F6S3	A0A1Y2F1G7	DASH complex subunit Ask1-domain-containing protein.	Spindle pole body component.	0.922
A0A1Y2F6S3	A0A1Y2FBZ9	DASH complex subunit Ask1-domain-containing protein.	Uncharacterized protein.	0.656
A0A1Y2F6S3	A0A1Y2FDW4	DASH complex subunit Ask1-domain-containing protein.	Uncharacterized protein.	0.656
A0A1Y2F6S3	A0A1Y2FUL3	DASH complex subunit Ask1-domain-containing protein.	Nucleoside diphosphate kinase.	0.588
A0A1Y2F818	A0A1Y2FBZ9	Putative chromatin assembly factor 1 subunit C.	Uncharacterized protein.	0.561