STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1Y2FC20Matrin-type domain-containing protein. (220 aa)    
Predicted Functional Partners:
A0A1Y2F2N6
Pre-mRNA splicing factor component-domain-containing protein.
    
 
 0.999
A0A1Y2FK71
Pre-mRNA splicing factor prp1.
   
 
 0.999
A0A1Y2FLM4
Putative splicing factor 3a subunit 3.
    
 0.996
A0A1Y2EYE1
Uncharacterized protein.
   
 0.995
A0A1Y2FDL8
Uncharacterized protein.
   
 0.991
A0A1Y2EU52
PSP domain-containing protein.
   
 0.988
A0A1Y2FSJ9
CPSF A subunit region-domain-containing protein.
   
 0.988
A0A1Y2EYQ6
Splicing factor 3B subunit 5/RDS3 complex subunit 10.
   
 0.987
A0A1Y2F8V6
Armadillo-type protein.
    
 0.987
A0A1Y2EV79
P-loop containing nucleoside triphosphate hydrolase protein; Belongs to the DEAD box helicase family.
    
 0.986
Your Current Organism:
Protomyces lactucaedebilis
NCBI taxonomy Id: 56484
Other names: NRRL YB-4353, P. lactucaedebilis
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