STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1Y2FCN0UBA_e1_C domain-containing protein; Belongs to the ubiquitin-activating E1 family. (1018 aa)    
Predicted Functional Partners:
A0A1Y2F8X5
E2_bind domain-containing protein.
    
0.999
A0A1Y2FEQ9
Ubiquitin-conjugating enzyme/RWD-like protein; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.999
A0A1Y2FH22
Polyubiquitin 10.
   
 0.999
A0A1Y2FNC6
Ubiquitin-conjugating enzyme/RWD-like protein; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.998
A0A1Y2FLL6
Ribosomal protein S27a-domain-containing protein.
    
 0.994
A0A1Y2FSN1
Ubiquitin-conjugating enzyme E2 N.
  
 0.979
A0A1Y2FNB3
Putative UBC11 protein; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.976
A0A1Y2FYT1
Ubiquitin-conjugating enzyme/RWD-like protein; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.976
A0A1Y2FDK8
Ubiquitin-conjugating enzyme/RWD-like protein.
   
 0.966
A0A1Y2FKP8
C2H2-type domain-containing protein.
   
 0.965
Your Current Organism:
Protomyces lactucaedebilis
NCBI taxonomy Id: 56484
Other names: NRRL YB-4353, P. lactucaedebilis
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