A0A1Y2FFL3 protein (Protomyces lactucaedebilis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A1Y2FFL3

VWFA domain-containing protein. (237 aa)

Predicted Functional Partners:

A0A1Y2FI86

0.999

A0A1Y2FUY7

0.999

A0A1Y2EXC5

0.998

A0A1Y2EYC9

0.998

A0A1Y2F1E0

0.998

A0A1Y2F5I5

0.998

A0A1Y2FK59

0.998

A0A1Y2FK65

0.998

A0A1Y2FNN3

0.998

A0A1Y2FT69

0.998

Your Current Organism:

Protomyces lactucaedebilis

NCBI taxonomy Id: 56484
Other names: NRRL YB-4353, P. lactucaedebilis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1Y2EXC5	A0A1Y2EYC9	26S proteasome subunit RPN7-domain-containing protein.	PCI domain-domain-containing protein.	0.999
A0A1Y2EXC5	A0A1Y2F1E0	26S proteasome subunit RPN7-domain-containing protein.	PCI domain-containing protein.	0.999
A0A1Y2EXC5	A0A1Y2F5I5	26S proteasome subunit RPN7-domain-containing protein.	Maintenance of mitochondrial structure and function-domain-containing protein.	0.999
A0A1Y2EXC5	A0A1Y2FFL3	26S proteasome subunit RPN7-domain-containing protein.	VWFA domain-containing protein.	0.998
A0A1Y2EXC5	A0A1Y2FI86	26S proteasome subunit RPN7-domain-containing protein.	One of six ATPases of the 19S regulatory particle of the 26S proteasome; Belongs to the AAA ATPase family.	0.999
A0A1Y2EXC5	A0A1Y2FK59	26S proteasome subunit RPN7-domain-containing protein.	One of six ATPases of the 19S regulatory particle of the 26S proteasome; Belongs to the AAA ATPase family.	0.997
A0A1Y2EXC5	A0A1Y2FK65	26S proteasome subunit RPN7-domain-containing protein.	COP9 signalosome.	0.995
A0A1Y2EXC5	A0A1Y2FNN3	26S proteasome subunit RPN7-domain-containing protein.	Proteasome subunit alpha type.	0.993
A0A1Y2EXC5	A0A1Y2FT69	26S proteasome subunit RPN7-domain-containing protein.	26S protease regulatory subunit 8; Belongs to the AAA ATPase family.	0.998
A0A1Y2EXC5	A0A1Y2FUY7	26S proteasome subunit RPN7-domain-containing protein.	P-loop containing nucleoside triphosphate hydrolase protein; Belongs to the AAA ATPase family.	0.998
A0A1Y2EYC9	A0A1Y2EXC5	PCI domain-domain-containing protein.	26S proteasome subunit RPN7-domain-containing protein.	0.999
A0A1Y2EYC9	A0A1Y2F1E0	PCI domain-domain-containing protein.	PCI domain-containing protein.	0.999
A0A1Y2EYC9	A0A1Y2F5I5	PCI domain-domain-containing protein.	Maintenance of mitochondrial structure and function-domain-containing protein.	0.999
A0A1Y2EYC9	A0A1Y2FFL3	PCI domain-domain-containing protein.	VWFA domain-containing protein.	0.998
A0A1Y2EYC9	A0A1Y2FI86	PCI domain-domain-containing protein.	One of six ATPases of the 19S regulatory particle of the 26S proteasome; Belongs to the AAA ATPase family.	0.999
A0A1Y2EYC9	A0A1Y2FK59	PCI domain-domain-containing protein.	One of six ATPases of the 19S regulatory particle of the 26S proteasome; Belongs to the AAA ATPase family.	0.997
A0A1Y2EYC9	A0A1Y2FK65	PCI domain-domain-containing protein.	COP9 signalosome.	0.998
A0A1Y2EYC9	A0A1Y2FNN3	PCI domain-domain-containing protein.	Proteasome subunit alpha type.	0.998
A0A1Y2EYC9	A0A1Y2FT69	PCI domain-domain-containing protein.	26S protease regulatory subunit 8; Belongs to the AAA ATPase family.	0.998
A0A1Y2EYC9	A0A1Y2FUY7	PCI domain-domain-containing protein.	P-loop containing nucleoside triphosphate hydrolase protein; Belongs to the AAA ATPase family.	0.999