STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1Y2FFQ1Putative transcription factor PacC. (72 aa)    
Predicted Functional Partners:
A0A1Y2F6I3
Nitrate reductase; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria.
    
 0.838
A0A1Y2F667
Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family.
   
 0.749
A0A1Y2FGL0
BRO1-like domain-domain-containing protein.
    
 
 0.741
A0A1Y2FUD8
Or S-antigen, N-terminal domain-domain-containing protein.
    
 
 0.698
A0A1Y2F742
Uncharacterized protein.
    
 0.663
A0A1Y2EUJ3
RNA polymerase III transcription factor IIIC subunit-domain-containing protein.
    
 0.661
A0A1Y2FGC7
BRO1-like domain-domain-containing protein.
    
 
 0.656
A0A1Y2F1F8
Ribosomal protein S2, flavodoxin-like domain-containing protein; Belongs to the universal ribosomal protein uS2 family.
   
  0.645
A0A1Y2F7T6
30S ribosomal protein S16.
   
  0.645
A0A1Y2FH59
Uncharacterized protein; Belongs to the universal ribosomal protein uS15 family.
   
  0.645
Your Current Organism:
Protomyces lactucaedebilis
NCBI taxonomy Id: 56484
Other names: NRRL YB-4353, P. lactucaedebilis
Server load: low (30%) [HD]