STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1Y2FGV3Nop domain-containing protein. (464 aa)    
Predicted Functional Partners:
A0A1Y2FBE5
Splicing factor, Prp19-binding domain-domain-containing protein.
   
 0.999
A0A1Y2FK71
Pre-mRNA splicing factor prp1.
   
 0.999
A0A1Y2FSW8
SART-1 protein.
   
 0.993
A0A1Y2F4B6
Pre-mRNA processing factor 3-domain-containing protein.
   
 0.992
A0A1Y2FWY6
Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.
    
 0.991
LSM8
U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.
    
 0.989
A0A1Y2FDE5
Putative U4/U6 small nuclear ribonucleo protein Prp4.
   
 0.988
A0A1Y2FAH6
P-loop containing nucleoside triphosphate hydrolase protein.
   
 0.987
A0A1Y2FAM5
PRP8 premRNA processing factor 8-like protein putative.
    
 0.987
A0A1Y2F9E4
Spliceosomal protein DIB1; Essential role in pre-mRNA splicing. Also essential for entry into mitosis (G2/M progression) as well as for chromosome segregation during mitosis; Belongs to the DIM1 family.
    
 0.986
Your Current Organism:
Protomyces lactucaedebilis
NCBI taxonomy Id: 56484
Other names: NRRL YB-4353, P. lactucaedebilis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.