STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1Y2FHH2Uncharacterized protein. (317 aa)    
Predicted Functional Partners:
A0A1Y2FQ28
Beta-lactamase-like protein.
    
  0.994
A0A1Y2FWQ5
DNA-directed RNA polymerase.
   
 0.977
A0A1Y2F7Q7
DNA-directed RNA polymerase I.
   
 0.974
A0A1Y2FGB8
Transcription elongation factor SPT4; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene.
   
 0.974
A0A1Y2FSN4
RNA polymerase II.
   
 0.973
A0A1Y2FVE4
DNA-directed RNA polymerase, subunit N/Rpb10.
   
 0.972
A0A1Y2FXS5
RNA polymerase, subunit omega/K/RPB6.
   
 0.970
A0A1Y2F7N5
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.
   
 0.969
A0A1Y2FA43
DNA-directed RNA polymerase.
   
 0.969
A0A1Y2FFD7
HRDC-like protein.
   
 0.969
Your Current Organism:
Protomyces lactucaedebilis
NCBI taxonomy Id: 56484
Other names: NRRL YB-4353, P. lactucaedebilis
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