STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1Y2FIV9Nickel/cobalt efflux system; Belongs to the NiCoT transporter (TC 2.A.52) family. (340 aa)    
Predicted Functional Partners:
A0A1Y2FK01
DNA polymerase; DNA polymerase that functions in several pathways of DNA repair. Involved in base excision repair (BER) responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Also contributes to DNA double-strand break repair by non-homologous end joining and homologous recombination. Has both template-dependent and template- independent (terminal transferase) DNA polymerase activities. Has also a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity.
 
      0.821
A0A1Y2F1Z5
Urease.
     
 0.782
A0A1Y2F530
Ubiquitin carboxyl-terminal hydrolase.
    
  0.669
A0A1Y2EWV8
Putative CDC48 ATPase; Belongs to the AAA ATPase family.
    
 0.667
A0A1Y2F6I8
P-loop containing nucleoside triphosphate hydrolase protein; Belongs to the AAA ATPase family.
    
 0.667
A0A1Y2FJ37
Fungal-specific transcription factor domain-domain-containing protein.
   
 0.666
A0A1Y2FJ54
Fungal-specific transcription factor domain-domain-containing protein.
   
 0.666
A0A1Y2FND5
Fungal-specific transcription factor domain-domain-containing protein.
   
 0.666
A0A1Y2FUH7
Putative ABC transporter.
   
 0.642
A0A1Y2FUY0
Putative ABC transporter.
   
 0.642
Your Current Organism:
Protomyces lactucaedebilis
NCBI taxonomy Id: 56484
Other names: NRRL YB-4353, P. lactucaedebilis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.