A0A1Y2FJ61 protein (Protomyces lactucaedebilis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A1Y2FJ61

Rab-GTPase-TBC domain-domain-containing protein. (741 aa)

Predicted Functional Partners:

A0A1Y2FH48

0.781

A0A1Y2F408

0.728

A0A1Y2ESR3

0.638

A0A1Y2FEV5

0.636

A0A1Y2FK74

0.636

A0A1Y2F697

0.631

A0A1Y2FGE3

0.629

A0A1Y2FKY6

0.628

A0A1Y2FDZ0

0.610

A0A1Y2EXT4

0.606

Your Current Organism:

Protomyces lactucaedebilis

NCBI taxonomy Id: 56484
Other names: NRRL YB-4353, P. lactucaedebilis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1Y2ESR3	A0A1Y2EXT4	ANTH domain-domain-containing protein.	Fungal-specific transcription factor domain-domain-containing protein.	0.632
A0A1Y2ESR3	A0A1Y2F408	ANTH domain-domain-containing protein.	Ras family-domain-containing protein.	0.525
A0A1Y2ESR3	A0A1Y2F697	ANTH domain-domain-containing protein.	Mu homology domain-containing protein; Belongs to the adaptor complexes medium subunit family.	0.686
A0A1Y2ESR3	A0A1Y2FDZ0	ANTH domain-domain-containing protein.	Kinase-like domain-containing protein.	0.836
A0A1Y2ESR3	A0A1Y2FEV5	ANTH domain-domain-containing protein.	AP complex subunit beta; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.	0.670
A0A1Y2ESR3	A0A1Y2FGE3	ANTH domain-domain-containing protein.	Sortilin; Functions as a sorting receptor in the Golgi compartment required for the intracellular sorting and delivery of soluble vacuolar proteins, like carboxypeptidase Y (CPY) and proteinase A.	0.625
A0A1Y2ESR3	A0A1Y2FJ61	ANTH domain-domain-containing protein.	Rab-GTPase-TBC domain-domain-containing protein.	0.638
A0A1Y2ESR3	A0A1Y2FK74	ANTH domain-domain-containing protein.	AP complex subunit beta; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.	0.670
A0A1Y2ESR3	A0A1Y2FKY6	ANTH domain-domain-containing protein.	Mannose-6-phosphate receptor binding domain-containing protein.	0.634
A0A1Y2EXT4	A0A1Y2ESR3	Fungal-specific transcription factor domain-domain-containing protein.	ANTH domain-domain-containing protein.	0.632
A0A1Y2EXT4	A0A1Y2F408	Fungal-specific transcription factor domain-domain-containing protein.	Ras family-domain-containing protein.	0.634
A0A1Y2EXT4	A0A1Y2FDZ0	Fungal-specific transcription factor domain-domain-containing protein.	Kinase-like domain-containing protein.	0.549
A0A1Y2EXT4	A0A1Y2FEV5	Fungal-specific transcription factor domain-domain-containing protein.	AP complex subunit beta; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.	0.827
A0A1Y2EXT4	A0A1Y2FGE3	Fungal-specific transcription factor domain-domain-containing protein.	Sortilin; Functions as a sorting receptor in the Golgi compartment required for the intracellular sorting and delivery of soluble vacuolar proteins, like carboxypeptidase Y (CPY) and proteinase A.	0.541
A0A1Y2EXT4	A0A1Y2FJ61	Fungal-specific transcription factor domain-domain-containing protein.	Rab-GTPase-TBC domain-domain-containing protein.	0.606
A0A1Y2EXT4	A0A1Y2FK74	Fungal-specific transcription factor domain-domain-containing protein.	AP complex subunit beta; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.	0.827
A0A1Y2F408	A0A1Y2ESR3	Ras family-domain-containing protein.	ANTH domain-domain-containing protein.	0.525
A0A1Y2F408	A0A1Y2EXT4	Ras family-domain-containing protein.	Fungal-specific transcription factor domain-domain-containing protein.	0.634
A0A1Y2F408	A0A1Y2F697	Ras family-domain-containing protein.	Mu homology domain-containing protein; Belongs to the adaptor complexes medium subunit family.	0.772
A0A1Y2F408	A0A1Y2FEV5	Ras family-domain-containing protein.	AP complex subunit beta; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.	0.618