STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1Y2FKM9Uncharacterized protein. (197 aa)    
Predicted Functional Partners:
A0A1Y2F7U2
MRG-domain-containing protein.
    
 
 0.920
A0A1Y2F818
Putative chromatin assembly factor 1 subunit C.
    
 
 0.792
A0A1Y2F935
HDAC_interact domain-containing protein.
   
 
 0.763
A0A1Y2F9P5
FAS1 domain-containing protein.
   
 
 0.763
A0A1Y2F9C7
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
   
 
 0.742
A0A1Y2F2N3
Thioredoxin-like_fold domain-containing protein.
   
 
 0.672
A0A1Y2EVG4
PLU-1-like protein-domain-containing protein.
    
 
 0.626
A0A1Y2F5A3
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
   
 
 0.580
A0A1Y2F942
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
   
 
 0.580
A0A1Y2F4P2
Histone deacetylase; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events.
   
 
 0.548
Your Current Organism:
Protomyces lactucaedebilis
NCBI taxonomy Id: 56484
Other names: NRRL YB-4353, P. lactucaedebilis
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