A0A1Y2FLW9 protein (Protomyces lactucaedebilis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A1Y2FLW9

SCA7, zinc-binding domain-domain-containing protein. (269 aa)

Predicted Functional Partners:

A0A1Y2FKD9

0.956

A0A1Y2EU48

0.942

A0A1Y2FEV1

0.941

A0A1Y2FR23

0.940

A0A1Y2EQ86

0.938

A0A1Y2FCZ8

0.932

A0A1Y2FL82

0.930

A0A1Y2F8F3

0.912

A0A1Y2EUL5

0.906

A0A1Y2FZC4

0.903

Your Current Organism:

Protomyces lactucaedebilis

NCBI taxonomy Id: 56484
Other names: NRRL YB-4353, P. lactucaedebilis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1Y2EQ86	A0A1Y2EU48	SGF29 tudor-like domain-domain-containing protein.	Transcription initiation factor TFIID subunit 6.	0.981
A0A1Y2EQ86	A0A1Y2EUL5	SGF29 tudor-like domain-domain-containing protein.	FAT domain-domain-containing protein; Belongs to the PI3/PI4-kinase family.	0.986
A0A1Y2EQ86	A0A1Y2F8F3	SGF29 tudor-like domain-domain-containing protein.	Transcription initiation factor TFIID 23-30kDa subunit-domain-containing protein.	0.973
A0A1Y2EQ86	A0A1Y2FCZ8	SGF29 tudor-like domain-domain-containing protein.	Transcription initiation factor IID, 31kD subunit-domain-containing protein.	0.987
A0A1Y2EQ86	A0A1Y2FEV1	SGF29 tudor-like domain-domain-containing protein.	Histone acetyltransferases subunit 3-domain-containing protein.	0.989
A0A1Y2EQ86	A0A1Y2FKD9	SGF29 tudor-like domain-domain-containing protein.	Bromo domain-containing protein.	0.987
A0A1Y2EQ86	A0A1Y2FL82	SGF29 tudor-like domain-domain-containing protein.	Transcriptional regulator of RNA polII, SAGA, subunit-domain-containing protein.	0.976
A0A1Y2EQ86	A0A1Y2FLW9	SGF29 tudor-like domain-domain-containing protein.	SCA7, zinc-binding domain-domain-containing protein.	0.938
A0A1Y2EQ86	A0A1Y2FR23	SGF29 tudor-like domain-domain-containing protein.	Histone acetyltransferase GCN5.	0.989
A0A1Y2EQ86	A0A1Y2FZC4	SGF29 tudor-like domain-domain-containing protein.	Ubiquitin carboxyl-terminal hydrolase.	0.975
A0A1Y2EU48	A0A1Y2EQ86	Transcription initiation factor TFIID subunit 6.	SGF29 tudor-like domain-domain-containing protein.	0.981
A0A1Y2EU48	A0A1Y2EUL5	Transcription initiation factor TFIID subunit 6.	FAT domain-domain-containing protein; Belongs to the PI3/PI4-kinase family.	0.986
A0A1Y2EU48	A0A1Y2F8F3	Transcription initiation factor TFIID subunit 6.	Transcription initiation factor TFIID 23-30kDa subunit-domain-containing protein.	0.999
A0A1Y2EU48	A0A1Y2FCZ8	Transcription initiation factor TFIID subunit 6.	Transcription initiation factor IID, 31kD subunit-domain-containing protein.	0.999
A0A1Y2EU48	A0A1Y2FEV1	Transcription initiation factor TFIID subunit 6.	Histone acetyltransferases subunit 3-domain-containing protein.	0.988
A0A1Y2EU48	A0A1Y2FKD9	Transcription initiation factor TFIID subunit 6.	Bromo domain-containing protein.	0.988
A0A1Y2EU48	A0A1Y2FL82	Transcription initiation factor TFIID subunit 6.	Transcriptional regulator of RNA polII, SAGA, subunit-domain-containing protein.	0.986
A0A1Y2EU48	A0A1Y2FLW9	Transcription initiation factor TFIID subunit 6.	SCA7, zinc-binding domain-domain-containing protein.	0.942
A0A1Y2EU48	A0A1Y2FR23	Transcription initiation factor TFIID subunit 6.	Histone acetyltransferase GCN5.	0.959
A0A1Y2EU48	A0A1Y2FZC4	Transcription initiation factor TFIID subunit 6.	Ubiquitin carboxyl-terminal hydrolase.	0.956