A0A1Y2FNF3 protein (Protomyces lactucaedebilis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A1Y2FNF3

Transcriptional regulator TACO1-like protein. (270 aa)

Predicted Functional Partners:

A0A1Y2FBR7

0.764

A0A1Y2FIF4

0.751

A0A1Y2F3X9

0.707

A0A1Y2FT12

0.637

A0A1Y2FT17

0.636

A0A1Y2FDT5

0.594

TSF1

0.574

A0A1Y2FML1

0.561

A0A1Y2FG10

0.508

A0A1Y2FVD7

0.507

Your Current Organism:

Protomyces lactucaedebilis

NCBI taxonomy Id: 56484
Other names: NRRL YB-4353, P. lactucaedebilis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1Y2F3X9	A0A1Y2FBR7	A0A1Y2F3X9	A0A1Y2FBR7	tRNA synthetases class II-domain-containing protein.	Tyrosine--tRNA ligase.	0.663
A0A1Y2F3X9	A0A1Y2FML1	A0A1Y2F3X9	A0A1Y2FML1	tRNA synthetases class II-domain-containing protein.	Uncharacterized protein.	0.664
A0A1Y2F3X9	A0A1Y2FNF3	A0A1Y2F3X9	A0A1Y2FNF3	tRNA synthetases class II-domain-containing protein.	Transcriptional regulator TACO1-like protein.	0.707
A0A1Y2F3X9	A0A1Y2FT17	A0A1Y2F3X9	A0A1Y2FT17	tRNA synthetases class II-domain-containing protein.	Tyrosine--tRNA ligase.	0.848
A0A1Y2F3X9	TSF1	A0A1Y2F3X9	A0A1Y2FF41	tRNA synthetases class II-domain-containing protein.	Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.	0.567
A0A1Y2FBR7	A0A1Y2F3X9	A0A1Y2FBR7	A0A1Y2F3X9	Tyrosine--tRNA ligase.	tRNA synthetases class II-domain-containing protein.	0.663
A0A1Y2FBR7	A0A1Y2FNF3	A0A1Y2FBR7	A0A1Y2FNF3	Tyrosine--tRNA ligase.	Transcriptional regulator TACO1-like protein.	0.764
A0A1Y2FBR7	A0A1Y2FT17	A0A1Y2FBR7	A0A1Y2FT17	Tyrosine--tRNA ligase.	Tyrosine--tRNA ligase.	0.952
A0A1Y2FBR7	TSF1	A0A1Y2FBR7	A0A1Y2FF41	Tyrosine--tRNA ligase.	Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.	0.680
A0A1Y2FDT5	A0A1Y2FG10	A0A1Y2FDT5	A0A1Y2FG10	Fungal-specific transcription factor domain-domain-containing protein.	Major facilitator superfamily domain-containing protein.	0.526
A0A1Y2FDT5	A0A1Y2FNF3	A0A1Y2FDT5	A0A1Y2FNF3	Fungal-specific transcription factor domain-domain-containing protein.	Transcriptional regulator TACO1-like protein.	0.594
A0A1Y2FG10	A0A1Y2FDT5	A0A1Y2FG10	A0A1Y2FDT5	Major facilitator superfamily domain-containing protein.	Fungal-specific transcription factor domain-domain-containing protein.	0.526
A0A1Y2FG10	A0A1Y2FNF3	A0A1Y2FG10	A0A1Y2FNF3	Major facilitator superfamily domain-containing protein.	Transcriptional regulator TACO1-like protein.	0.508
A0A1Y2FIF4	A0A1Y2FNF3	A0A1Y2FIF4	A0A1Y2FNF3	Phosphoacetylglucosamine mutase; Catalyzes the conversion of GlcNAc-6-P into GlcNAc-1-P during the synthesis of uridine diphosphate/UDP-GlcNAc, which is a biosynthetic precursor of chitin and also supplies the amino sugars for N-linked oligosaccharides of glycoproteins. Belongs to the phosphohexose mutase family.	Transcriptional regulator TACO1-like protein.	0.751
A0A1Y2FIF4	A0A1Y2FVD7	A0A1Y2FIF4	A0A1Y2FVD7	Phosphoacetylglucosamine mutase; Catalyzes the conversion of GlcNAc-6-P into GlcNAc-1-P during the synthesis of uridine diphosphate/UDP-GlcNAc, which is a biosynthetic precursor of chitin and also supplies the amino sugars for N-linked oligosaccharides of glycoproteins. Belongs to the phosphohexose mutase family.	Uncharacterized protein; Belongs to the phosphohexose mutase family.	0.909
A0A1Y2FML1	A0A1Y2F3X9	A0A1Y2FML1	A0A1Y2F3X9	Uncharacterized protein.	tRNA synthetases class II-domain-containing protein.	0.664
A0A1Y2FML1	A0A1Y2FNF3	A0A1Y2FML1	A0A1Y2FNF3	Uncharacterized protein.	Transcriptional regulator TACO1-like protein.	0.561
A0A1Y2FML1	A0A1Y2FT12	A0A1Y2FML1	A0A1Y2FT12	Uncharacterized protein.	Translation protein SH3-like domain-containing protein.	0.998
A0A1Y2FML1	A0A1Y2FT17	A0A1Y2FML1	A0A1Y2FT17	Uncharacterized protein.	Tyrosine--tRNA ligase.	0.606
A0A1Y2FML1	TSF1	A0A1Y2FML1	A0A1Y2FF41	Uncharacterized protein.	Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.	0.946