STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1Y2FNJ5Glycoside hydrolase superfamily; Belongs to the glycosyl hydrolase 17 family. (323 aa)    
Predicted Functional Partners:
A0A1Y2F4D9
Uncharacterized protein.
    
 0.852
A0A1Y2FRY7
Uncharacterized protein.
    
 0.788
A0A1Y2FH57
Actin-1; Belongs to the actin family.
    
 0.787
A0A1Y2FYK6
SWIB domain-containing protein.
    
 0.787
A0A1Y2FGZ0
Uncharacterized protein.
    
 0.763
A0A1Y2FCD6
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
    
 0.760
A0A1Y2FJ03
Uncharacterized protein.
    
 0.759
A0A1Y2FI57
SWIB domain-containing protein.
    
 0.754
A0A1Y2FC21
Bromodomain-containing protein.
    
 0.753
A0A1Y2FK84
Bromodomain-containing protein.
    
 0.753
Your Current Organism:
Protomyces lactucaedebilis
NCBI taxonomy Id: 56484
Other names: NRRL YB-4353, P. lactucaedebilis
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