STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1Y2FNX6Uncharacterized protein. (331 aa)    
Predicted Functional Partners:
A0A1Y2ETF0
Putative eukaryotic translation initiation factor eIF-4A subunit; Belongs to the DEAD box helicase family.
   
 0.685
A0A1Y2F0H5
Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.
   
 0.679
A0A1Y2FLZ8
Nuclear cap-binding protein subunit 2.
    
 0.677
A0A1Y2FNJ7
MIF4G like-domain-containing protein.
    
 0.676
A0A1Y2FH06
Translation initiation factor eIF2 gamma subunit.
   
 0.672
A0A1Y2FFD7
HRDC-like protein.
    
 0.666
A0A1Y2EZG5
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
  0.663
A0A1Y2FFF1
Carbamoyl-phosphate synthase L chain, ATP binding domain-domain-containing protein.
    
 0.663
A0A1Y2FVE4
DNA-directed RNA polymerase, subunit N/Rpb10.
    
  0.663
A0A1Y2F7N5
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.
    
  0.660
Your Current Organism:
Protomyces lactucaedebilis
NCBI taxonomy Id: 56484
Other names: NRRL YB-4353, P. lactucaedebilis
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