A0A1Y2FR01 protein (Protomyces lactucaedebilis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A1Y2FR01

Multi protein bridging factor 1-domain-containing protein. (146 aa)

Predicted Functional Partners:

A0A1Y2FDS5

0.943

A0A1Y2F7T5

0.928

A0A1Y2EX74

0.924

A0A1Y2FM40

0.921

A0A1Y2FER8

0.918

A0A1Y2FIT2

0.913

A0A1Y2FDD6

0.912

A0A1Y2FFK7

0.911

A0A1Y2ESP9

0.910

A0A1Y2FQE9

0.910

Your Current Organism:

Protomyces lactucaedebilis

NCBI taxonomy Id: 56484
Other names: NRRL YB-4353, P. lactucaedebilis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1Y2ESP9	A0A1Y2EX74	40S ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family.	Putative 60S ribosomal protein L35.	0.997
A0A1Y2ESP9	A0A1Y2F7T5	40S ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family.	Ribosomal protein S10 domain-containing protein.	0.999
A0A1Y2ESP9	A0A1Y2FDD6	40S ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family.	40S ribosomal protein S21; Required for the processing of the 20S rRNA-precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. Has a physiological role leading to 18S rRNA stability.	0.999
A0A1Y2ESP9	A0A1Y2FDS5	40S ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family.	Ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.	0.999
A0A1Y2ESP9	A0A1Y2FER8	40S ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family.	60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family.	0.997
A0A1Y2ESP9	A0A1Y2FFK7	40S ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family.	40S ribosomal protein S5-B.	0.999
A0A1Y2ESP9	A0A1Y2FIT2	40S ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family.	Guanine nucleotide-binding protein subunit beta-like protein.	0.997
A0A1Y2ESP9	A0A1Y2FM40	40S ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.996
A0A1Y2ESP9	A0A1Y2FQE9	40S ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family.	40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.	0.999
A0A1Y2ESP9	A0A1Y2FR01	40S ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family.	Multi protein bridging factor 1-domain-containing protein.	0.910
A0A1Y2EX74	A0A1Y2ESP9	Putative 60S ribosomal protein L35.	40S ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family.	0.997
A0A1Y2EX74	A0A1Y2F7T5	Putative 60S ribosomal protein L35.	Ribosomal protein S10 domain-containing protein.	0.997
A0A1Y2EX74	A0A1Y2FDD6	Putative 60S ribosomal protein L35.	40S ribosomal protein S21; Required for the processing of the 20S rRNA-precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. Has a physiological role leading to 18S rRNA stability.	0.997
A0A1Y2EX74	A0A1Y2FDS5	Putative 60S ribosomal protein L35.	Ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.	0.998
A0A1Y2EX74	A0A1Y2FER8	Putative 60S ribosomal protein L35.	60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family.	0.997
A0A1Y2EX74	A0A1Y2FFK7	Putative 60S ribosomal protein L35.	40S ribosomal protein S5-B.	0.997
A0A1Y2EX74	A0A1Y2FIT2	Putative 60S ribosomal protein L35.	Guanine nucleotide-binding protein subunit beta-like protein.	0.995
A0A1Y2EX74	A0A1Y2FM40	Putative 60S ribosomal protein L35.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.996
A0A1Y2EX74	A0A1Y2FQE9	Putative 60S ribosomal protein L35.	40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.	0.997
A0A1Y2EX74	A0A1Y2FR01	Putative 60S ribosomal protein L35.	Multi protein bridging factor 1-domain-containing protein.	0.924