STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1Y2FUZ0Uncharacterized protein. (1080 aa)    
Predicted Functional Partners:
A0A1Y2EYF4
3'-5' exonuclease domain-containing protein.
  
 0.995
A0A1Y2EYK6
Ribonuclease H-like domain-containing protein.
  
 0.995
A0A1Y2FUG9
Uncharacterized protein.
    
 0.984
A0A1Y2F5X7
Transcription factor TFIIH complex ERCC-3 subunit.
    
 0.975
A0A1Y2F2W2
DNA repair helicase RAD3.
    
 0.974
A0A1Y2FP20
UV-endonuclease UvdE-domain-containing protein.
    
 
 0.941
A0A1Y2FI93
Putative DNA repair protein Mus81.
   
 0.937
A0A1Y2F7K0
SNF2 family N-terminal domain-domain-containing protein.
    
 0.910
A0A1Y2F3W4
General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.
    
 0.909
A0A1Y2FNC8
P-loop containing nucleoside triphosphate hydrolase protein.
    
 0.907
Your Current Organism:
Protomyces lactucaedebilis
NCBI taxonomy Id: 56484
Other names: NRRL YB-4353, P. lactucaedebilis
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