Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GACE_0002Hypothetical protein. (156 aa)    
Predicted Functional Partners:
GACE_0003
Acetylornithine deacetylase.
       0.773
GACE_0004
Radical SAM domain protein.
       0.773
GACE_0005
F420H2-quinone oxidoreductase, subunit J.
       0.472
GACE_0006
F420H2-quinone oxidoreductase, subunit K.
       0.472
GACE_0007
F420H2-quinone oxidoreductase, subunit M.
       0.472
GACE_0008
F420H2-quinone oxidoreductase, subunit L.
       0.472
GACE_0009
F420H2-quinone oxidoreductase, subunit N.
       0.472
GACE_0010
F420H2-quinone oxidoreductase, subunit A.
       0.472
GACE_0011
F420H2-quinone oxidoreductase, subunit BC (fused).
       0.472
GACE_0012
F420H2-quinone oxidoreductase, subunit D.
       0.472
Your Current Organism:
Geoglobus acetivorans
NCBI taxonomy Id: 565033
Other names: DSM 21716, G. acetivorans, Geoglobus acetivorans Slobodkina et al. 2009, Geoglobus sp. SBH6, VKM B-2522, strain SBH6
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