STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GACE_01014Fe-4S ferredoxin iron-sulfur binding domain protein. (253 aa)    
Predicted Functional Partners:
GACE_0102
Cytochrome c family protein.
 
     0.961
GACE_0795
Putative dehydrogenase subunit.
  
 
 0.948
GACE_0100
Polysulfide reductase, NrfD.
 
   
 0.936
GACE_0716
Hydrogenase (NiFe), b-type cytochrome subunit.
  
 
 0.934
GACE_2073
Cytochrome C oxidase.
  
 
 0.860
GACE_0276
Glutamate synthase domain 2; Belongs to the glutamate synthase family.
  
  
 0.846
GACE_1222
MolR family transcriptional regulator.
     
 0.830
GACE_0474
Aldehyde:ferredoxin oxidoreductase.
  
 
 0.749
GACE_0481
Aldehyde:ferredoxin oxidoreductase.
  
 
 0.749
GACE_0775
Aldehyde:ferredoxin oxidoreductase.
  
 
 0.749
Your Current Organism:
Geoglobus acetivorans
NCBI taxonomy Id: 565033
Other names: DSM 21716, G. acetivorans, Geoglobus acetivorans Slobodkina et al. 2009, Geoglobus sp. SBH6, VKM B-2522, strain SBH6
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