STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GACE_0168Flagella-related protein FlaI. (521 aa)    
Predicted Functional Partners:
GACE_1210
Transporter.
 
  
 0.785
GACE_0543
Type II secretion system protein.
 
  
 0.768
GACE_0660
Flagella-related protein FlaJ.
 
  
 0.767
GACE_0096
Type II secretion system protein.
 
  
 0.754
GACE_0658
Flagella-related protein FlaH.
 
  
 0.736
GACE_0167
Hypothetical protein.
       0.691
GACE_0656
Hypothetical protein.
  
  
 0.642
GACE_0166
Rhomboid family serine protease.
       0.618
GACE_0165
Radical SAM domain protein.
       0.616
pdaD
Pyruvoyl-dependent arginine decarboxylase; Belongs to the PdaD family.
 
     0.582
Your Current Organism:
Geoglobus acetivorans
NCBI taxonomy Id: 565033
Other names: DSM 21716, G. acetivorans, Geoglobus acetivorans Slobodkina et al. 2009, Geoglobus sp. SBH6, VKM B-2522, strain SBH6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.