STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GACE_0635Fe-S oxidoreductase. (659 aa)    
Predicted Functional Partners:
GACE_1559
Hypothetical protein.
  
 
 0.760
GACE_0261
Iron-sulfur cluster-binding protein.
  
 
 0.715
GACE_1560
(Fe-S)-binding protein.
  
 
 0.715
GACE_1695
Electron transfer flavoprotein, beta subunit.
 
  
 0.622
GACE_1696
Electron transfer flavoprotein, alpha subunit.
 
  
 0.588
gap
Glyceraldehyde-3-phosphate dehydrogenase NAD(P)-dependent, phosphorylating.
 
  
 0.529
GACE_1902
Heterodisulfide reductase iron-sulfur subunit D.
  
 0.528
GACE_0932
CoB--CoM heterodisulfide reductase subunit C.
 
 
 0.498
rps8e
SSU ribosomal protein S8e.
       0.487
GACE_0931
CoB--CoM heterodisulfide reductase subunit B.
 
 
 0.454
Your Current Organism:
Geoglobus acetivorans
NCBI taxonomy Id: 565033
Other names: DSM 21716, G. acetivorans, Geoglobus acetivorans Slobodkina et al. 2009, Geoglobus sp. SBH6, VKM B-2522, strain SBH6
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