Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GACE_0776Hypothetical protein. (49 aa)    
Predicted Functional Partners:
GACE_0774
4Fe-4S ferredoxin iron-sulfur binding domain protein.
       0.792
GACE_0773
Methyltransferase.
       0.773
GACE_0775
Aldehyde:ferredoxin oxidoreductase.
       0.773
GACE_0777
2-hydroxycyclohexane-1-carboxyl-CoA dehydrogenase, BadH.
       0.625
GACE_0771
Isochorismatase hydrolase.
       0.510
GACE_0772
Phenylacetate-coenzyme A ligase.
       0.510
GACE_0778
Signal-transduction protein with CBS domain.
       0.475
GACE_0779
Branched-chain amino acid ABC transporter ATP-binding protein LivF.
       0.475
GACE_0780
Branched-chain amino acid ABC transporter ATP-binding protein LivG.
       0.475
Your Current Organism:
Geoglobus acetivorans
NCBI taxonomy Id: 565033
Other names: DSM 21716, G. acetivorans, Geoglobus acetivorans Slobodkina et al. 2009, Geoglobus sp. SBH6, VKM B-2522, strain SBH6
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