STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GACE_07872-hydroxyglutaryl-CoA dehydratase subunit HgdA. (408 aa)    
Predicted Functional Partners:
GACE_0788
2-hydroxyglutaryl-CoA dehydratase subunit HgdC.
 
 
 0.973
GACE_0786
2-hydroxyglutaryl-CoA dehydratase subunit HgdB.
 
     0.936
GACE_0796
Benzoyl-CoA reductase, bzd-type, BzdQ subunit.
 
 
 0.902
GACE_0797
Benzoyl-CoA reductase, bzd-type, BzdP subunit.
 
 
 0.902
GACE_0785
Benzoate-CoA ligase.
     
 0.750
GACE_0799
Benzoyl-CoA reductase, bzd-type, BzdN subunit.
 
     0.715
GACE_0789
2-ketocyclohexane-carboxyl-CoA hydrolase, BadI.
     
 0.513
GACE_0783
Branched-chain amino acid ABC transporter, permease protein LivH.
       0.420
GACE_0784
Branched-chain amino acid transport system permease protein LivM.
       0.416
Your Current Organism:
Geoglobus acetivorans
NCBI taxonomy Id: 565033
Other names: DSM 21716, G. acetivorans, Geoglobus acetivorans Slobodkina et al. 2009, Geoglobus sp. SBH6, VKM B-2522, strain SBH6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.