Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
GACE_0804Didehydro-pimeloyl-CoA hydratase, Dph. (253 aa)    
Predicted Functional Partners:
GACE_0798
Benzoyl-CoA reductase, bzd-type, BzdO subunit.
 
  
  0.931
GACE_0799
Benzoyl-CoA reductase, bzd-type, BzdN subunit.
 
  
  0.927
GACE_0796
Benzoyl-CoA reductase, bzd-type, BzdQ subunit.
    
 0.919
GACE_0797
Benzoyl-CoA reductase, bzd-type, BzdP subunit.
    
 0.919
GACE_0794
acetyl-CoA acetyltransferase.
  
 0.893
GACE_0093
3-ketoacyl-CoA thiolase.
  
 0.880
GACE_0723
3-ketoacyl-CoA thiolase.
  
 0.880
GACE_0766
3-ketoacyl-CoA thiolase.
  
 0.875
GACE_1175
3-ketoacyl-CoA thiolase.
  
 0.875
GACE_1692
Acetyl-CoA C-acyltransferase.
  
 0.875
Your Current Organism:
Geoglobus acetivorans
NCBI taxonomy Id: 565033
Other names: DSM 21716, G. acetivorans, Geoglobus acetivorans Slobodkina et al. 2009, Geoglobus sp. SBH6, VKM B-2522, strain SBH6
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