STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GACE_0934Glycerophosphoryl diester phosphodiesterase. (543 aa)    
Predicted Functional Partners:
GACE_1269
Glycerol uptake facilitator.
  
 
 0.808
GACE_1965
Histidine kinase.
 
  
 0.660
GACE_0935
NADPH-dependent F420 reductase.
       0.628
GACE_0933
Isocitrate dehydrogenase (NADP-dependent).
       0.609
GACE_0813
Phosphate transport system permease protein PstA.
  
  
 0.566
GACE_1758
Sugar phosphatase of the HAD superfamily.
 
  
 0.529
GACE_0951
Phosphatidylserine decarboxylase.
  
  
 0.518
rpl4
LSU ribosomal protein L1e (L4p); Forms part of the polypeptide exit tunnel.
  
  
 0.512
GACE_0403
Alpha/beta hydrolase family protein.
     
 0.510
GACE_0546
Uridine kinase.
 
     0.497
Your Current Organism:
Geoglobus acetivorans
NCBI taxonomy Id: 565033
Other names: DSM 21716, G. acetivorans, Geoglobus acetivorans Slobodkina et al. 2009, Geoglobus sp. SBH6, VKM B-2522, strain SBH6
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