STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GACE_0968ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component. (294 aa)    
Predicted Functional Partners:
GACE_0967
Sulfopyruvate decarboxylase - beta subunit.
 
    0.964
GACE_0966
Cysteate synthase.
 
    0.863
GACE_1965
Histidine kinase.
  
  
 0.831
mer
Methylentetrahydromethanopterin reductase; Catalyzes the oxidation of methyl-H(4)MPT to methylene- H(4)MPT; Belongs to the mer family.
 
  
 0.700
GACE_1505
F420-dependent oxidoreductase.
  
  
 0.650
GACE_1821
Hypothetical protein.
  
  
 0.650
cysC
Adenylylsulfate kinase; Catalyzes the synthesis of activated sulfate.
  
  
 0.590
GACE_1093
Ferredoxin--nitrite reductase.
  
  
 0.568
GACE_1260
Siroheme synthase.
  
  
 0.498
GACE_0795
Putative dehydrogenase subunit.
  
  
 0.489
Your Current Organism:
Geoglobus acetivorans
NCBI taxonomy Id: 565033
Other names: DSM 21716, G. acetivorans, Geoglobus acetivorans Slobodkina et al. 2009, Geoglobus sp. SBH6, VKM B-2522, strain SBH6
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