Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GACE_1102Hypothetical protein. (73 aa)    
Predicted Functional Partners:
GACE_1087
Cysteine desulfurase.
   
 0.978
GACE_1088
Rhodanese-like domain protein.
    
  0.925
GACE_1483
Hypothetical protein.
     
  0.900
GACE_1101
Sulfur carrier protein adenylyltransferase ThiF.
 
   
 0.873
GACE_1100
Molybdopterin biosynthesis protein.
   
 
 0.860
GACE_1099
Threonine synthase.
       0.837
GACE_1098
Hypothetical protein.
  
  
 0.750
GACE_0288
Hypothetical protein.
  
  
 0.698
GACE_1096
Adenylylsulfate reductase beta-subunit.
 
     0.697
GACE_1095
Adenylylsulfate reductase alpha-subunit.
 
   
 0.677
Your Current Organism:
Geoglobus acetivorans
NCBI taxonomy Id: 565033
Other names: DSM 21716, G. acetivorans, Geoglobus acetivorans Slobodkina et al. 2009, Geoglobus sp. SBH6, VKM B-2522, strain SBH6
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